cDNA amplification kits for 5′ and 3′ RACE
Rapid amplification of cDNA ends (RACE) is a technique used to obtain the full-length sequences of RNA transcripts. RACE can provide the sequence of an RNA transcript from a short, known sequence within the transcript all the way to the 5′ end (5′ RACE-PCR) or 3′ end (3′ RACE-PCR) of the RNA.
The SMARTer RACE 5’/3′ Kit is an improved version of the SMARTer RACE cDNA Amplification Kit. The SMARTer RACE 5’/3′ Kit provides improved sensitivity, less background and higher specificity over the previous generation of kits. First-strand cDNA generated with this kit can be used directly in 5′- and 3′-RACE PCR reactions. The SMARTer protocol does not involve any of the adaptor ligation steps that other RACE kits incorporate, making the protocol shorter and significantly easier to execute. The new kit is also designed to accommodate larger RNA input volumes (up to 11 µl) and has been shown to perform more efficiently on challenging targets (e.g., those that are long, GC-rich, etc.). The kit includes our highly robust SeqAmp DNA Polymerase for amplification of products, and the In-Fusion HD Cloning Kit for efficient cloning of RACE fragments in the provided linearized vector. The SMARTer RACE 5’/3′ procedure combines SMART first-strand cDNA synthesis technology with a powerful suppression PCR protocol that vastly reduces the background amplification commonly associated with RACE protocols.
- Easy to use—the SMARTer RACE protocol is performed in a single tube, and minimizes handling of both your RNA sample and your synthesized cDNA. Total hands-on time is only four hours.
- Complete kit—the SMARTer RACE 5’/3’ Kit contains all the necessary components (save gene-specific primers) to streamline your process. With this single kit, you can begin first-strand cDNA synthesis and proceed through cloning RACE fragments, recovering successful clones on day two.
- Requires only 10 ng of total RNA—our SMARTer RACE method allows you to utilize small samples, including biopsies, tissue dissections, needle aspirations, and embryonic and rare disease tissues. This optimized protocol significantly reduces non-specific background, which is helpful for analysis of small inputs.
- Specific enrichment for 5′ ends—our carefully designed, chemically treated SMARTer Oligo preferentially hybridizes to the 5′ ends of the cDNA being synthesized. Using this SMARTer Oligo, our procedure enriches cDNA pools for 5′ sequences, thus increasing the likelihood you will amplify the entire sequence of your gene or the upstream regulatory regions.
- No RNA pretreatment required—our SMARTer RACE method requires no RNA pretreatment with DNase. This protocol works with total RNA, as well as with samples that may be contaminated with genomic DNA.
Overview
SMARTer RACE 5’/3′ Kit (Cat. # 634858, 634859)
- Simple kit—easy to use
- SeqAmp DNA Polymerase provides robust PCR performance
- In-Fusion HD technology enables fast, easy cloning of RACE fragments
- Requires only 10 ng of total RNA
- Specific enrichment for either 5′ or 3′ ends
- No RNA pretreatment required
Marathon cDNA Amplification Kit (Cat. # 634913)
- Quickly obtain cDNAs without library screening
- Avoid troublesome single-stranded ligation or tailing reactions
- Perform 5′ and 3′ RACE from the same template
More Information
Applications
- RACE (Rapid Amplification of cDNA Ends)
- Identification of 3’/5′ UTRs
- Full-length gene cloning
- Gene cloning and analysis
Cat. # | Product | Size | Description |
634913 | Marathon® cDNA Amplification Kit | 100 Rxns | This kit contains reagents for making adaptor-ligated ds cDNA from poly A+ RNA and performing 5′ and 3′ Marathon RACE PCR using gene-specific primers and a mixture of thermostable DNA polymerases supplied by the user. This kit contains sufficient reagents for 5 cDNA synthesis reactions and 100 PCR reactions. |
634859 | SMARTer® RACE 5’/3’ Kit | 20 Rxns | The SMARTer RACE 5’/3′ Kit allows the synthesis of first-strand cDNA from poly A+ or total RNA via SMART (Switching Mechanism At 5′ End of RNA Template) technology, and facilitates the performance of 5′- and 3′-RACE (Rapid Amplification of cDNA Ends) PCR with the kit’s Universal Primer Mix. Our carefully designed, specially-modified SMARTer Oligo preferentially captures the 5′ ends of the cDNA during cDNA synthesis. Using this SMARTer Oligo, our procedure enriches cDNA pools for 5′ sequences, thus increasing the likelihood you will amplify the entire sequence of your gene.
RACE PCR products are amplified with the provided SeqAmp DNA Polymerase, and cloned into the linearized pRACE vector with In-Fusion HD Cloning. The SMARTer RACE 5’/3′ Kit has been improved to accommodate larger RNA input volumes and perform better on challenging targets than the original SMARTer RACE cDNA Amplification Kit. The In-Fusion HD Cloning Kit, NucleoSpin Gel and PCR Clean-Up Kit, and Stellar Competent Cells are included for your convenience in cloning RACE products. Gene specific RACE primers are supplied by the user. |
634858 | SMARTer® RACE 5’/3’ Kit | 10 Rxns |
The SMARTer RACE 5’/3′ Kit allows the synthesis of first-strand cDNA from poly A+ or total RNA via SMART (Switching Mechanism At 5′ End of RNA Template) technology, and facilitates the performance of 5′- and 3′-RACE (Rapid Amplification of cDNA Ends) PCR with the kit’s Universal Primer Mix. Our carefully designed, specially-modified SMARTer Oligo preferentially captures the 5′ ends of the cDNA during cDNA synthesis. Using this SMARTer Oligo, our procedure enriches cDNA pools for 5′ sequences, thus increasing the likelihood you will amplify the entire sequence of your gene. RACE PCR products are amplified with the provided SeqAmp DNA Polymerase, and cloned into the linearized pRACE vector with In-Fusion HD Cloning. The SMARTer RACE 5’/3′ Kit has been improved to accommodate larger RNA input volumes and perform better on challenging targets than the original SMARTer RACE cDNA Amplification Kit. The In-Fusion HD Cloning Kit, NucleoSpin Gel and PCR Clean-Up Kit, and Stellar Competent Cells are included for your convenience in cloning RACE products. Gene-specific RACE primers are supplied by the user. |
634922 | Universal Primer Mix | 100 Rxns |
The Universal Primer Mix (UPM) adds suppression PCR elements to the ends of cDNA generated by our SMARTer RACE 5’/3′ Kit (Cat. Nos. 634858 & 634859). The UPM consists of two primers: a long, 45-base primer and a short, 22-base primer. The Long Universal Primer (Long UP) is composed of two parts: the 23 bases at the 3′ end of the primer are identical to those at the 5′ end of the SMARTer IIA Oligo; the 22 bases at the 5′ end of the primer provide the suppression sequence for suppression PCR. The Short Universal Primer (Short UP) sequence is identical to that of the 22 bases at the 5′ end of the Long UP. The Short UP, for which the binding site is introduced by the Long UP during the first round of PCR, is present in the UPM at 5 times the concentration of the Long UP. |